2022 Publications (Full List)

Faculty Publications:

  1. Ortega P, Vitorino HA, Green S, Zanotto FP, Chung JS, Moreira RG. Experimental effects of cadmium on physiological response of Callinectes danae (Crustacea, Portunidae) from environments with different levels of Cd contamination. Comp Biochem Physiol C Toxicol Pharmacol. 

  2. Lawrence A, Green S, Wang T, Bachvaroff T, Chung JS. Seasonal changes in the expression of insulin-like androgenic hormone (IAG) in the androgenic gland of the Jonah crab, Cancer borealis. PLoS One.

  3. Wang T, He K, Blaney L, Chung JS. 17β-Estradiol (E2) may be involved in the mode of crustacean female sex hormone (CFSH) action in the blue crab, Callinectes sapidus. Front Endocrinol (Lausanne).

  4. In-Sook Ahn, J. Sook Chung. Crustacean Female Sex Hormone (CFSH) Transcript and Protein Profiles and Its Functions in Gradually Developing Adult-Specific-Features during the Prepuberty Molt Cycle of the Blue Crab, Callinectes sapidus. Journal of Shellfish Research.

  5. Dooley H. Generation of VNAR Libraries from Immunized Sharks and Selection of Target-Specific Clones. Methods Mol Biol.

  6. Buckley KM, Dooley H. Immunological Diversity Is a Cornerstone of Organismal Defense and Allorecognition across Metazoa. J Immunol.

  7. Bakke FK, Gundappa MK, Matz H, Stead DA, Macqueen DJ, Dooley H. Exploration of the Nurse Shark (Ginglymostoma cirratum) Plasma Immunoproteome Using High-Resolution LC-MS/MS. Front Immunol.

  8. Rajsri KS, McRae MP, Simmons GW, Christodoulides NJ, Matz H, Dooley H, Koide A, Koide S, McDevitt JT. A Rapid and Sensitive Microfluidics-Based Tool for Seroprevalence Immunity Assessment of COVID-19 and Vaccination-Induced Humoral Antibody Response at the Point of Care. Biosensors (Basel).

  9. Redmond AK, Pettinello R, Bakke FK, Dooley H. Sharks Provide Evidence for a Highly Complex TNFSF Repertoire in the Jawed Vertebrate Ancestor. J Immunol.

  10. Lin H, Li Y, Hill RT. Microalgal and bacterial auxin biosynthesis: implications for algal biotechnology. Curr Opin Biotechnol.

  11. Cheng P, Li Y, Wang C, Guo J, Zhou C, Zhang R, Ma Y, Ma X, Wang L, Cheng Y, Yan X, Ruan R. Integrated marine microalgae biorefineries for improved bioactive compounds: A review. Sci Total Environ.

  12. Yang J, Liu J, Pan Y, Maréchal E, Amato A, Liu M, Gong Y, Li Y, Hu H. PDAT regulates PE as transient carbon sink alternative to triacylglycerol in Nannochloropsis. Plant Physiol.

  13. Lee YY, Park R, Miller SM, Li Y. Genetic compensation of triacylglycerol biosynthesis in the green microalga Chlamydomonas reinhardtii. Plant J.

  14. Li Y. Algal epigenetics: insights from DNA methylation in a symbiotic dinoflagellate. J Phycol.

  15. Zhao M, Xu L, Bowers H, Schott EJ. Characterization of Two Novel Toti-Like Viruses Co-infecting the Atlantic Blue Crab, Callinectes sapidus, in Its Northern Range of the United States. Front Microbiol.

  16. Prestes Dos Santos Tavares C, Zhao M, Lopes Vogt É, Felipe Argenta Model J, Sommer Vinagre A, de Assis Teixeira da Silva U, Ostrensky A, James Schott E. High prevalence of CsRV2 in cultured Callinectes danae: Potential impacts on soft-shell crab production in Brazil. J Invertebr Pathol.

  17. Matthew W. Gray, Stephanie T. Alexander, Brian F. Beal, Tom Bliss, Colleen A. Burge, Jacob A. Cram, Michael De Luca, James Dumhart, Patricia M. Glibert, Michael Gonsior, Andrew Heyes, Klaus B. Huebert, Vyacheslav Lyubchich, Katherine McFarland, Matt Parker, Louis V. Plough, Eric J. Schott, Lisa A. Wainger, Gary H. Wikfors, Ami E. Wilbur. Hatchery crashes among shellfish research hatcheries along the Atlantic coast of the United States: A case study of production analysis at Horn Point Laboratory. Aquaculture.

  18. Mukkayyan N, Poon R, Sander PN, Lai LY, Zubair-Nizami Z, Hammond MC, Chatterjee SS. In Vivo Detection of Cyclic-di-AMP in Staphylococcus aureus. ACS Omega.

  19. Satishkumar N, Lai LY, Mukkayyan N, Vogel BE, Chatterjee SS. A Nonclassical Mechanism of β-Lactam Resistance in Methicillin-Resistant Staphylococcus aureus and Its Effect on Virulence. Microbiol Spectr.

  20. Zhao J, Jing H, Wang Z, Wang L, Jian H, Zhang R, Xiao X, Chen F, Jiao N, Zhang Y. Novel Viral Communities Potentially Assisting in Carbon, Nitrogen, and Sulfur Metabolism in the Upper Slope Sediments of Mariana Trench. mSystems.

  21. Zheng H, Liu B, Xu Y, Zhang Z, Man H, Liu J, Chen F. An Inducible Microbacterium Prophage vB_MoxS-R1 Represents a Novel Lineage of Siphovirus. Viruses.

  22. He C, Liu J, Wang R, Li Y, Zheng Q, Jiao F, He C, Shi Q, Xu Y, Zhang R, Thomas H, Batt J, Hill P, Lewis M, Maclntyre H, Lu L, Zhang Q, Tu Q, Shi T, Chen F, Jiao N. Metagenomic evidence for the microbial transformation of carboxyl-rich alicyclic molecules: A long-term macrocosm experiment. Water Res.

  23. Zhang M, Wang H, Chen F. Time-resolved transcriptome analysis of Scenedesmus obliquus HTB1 under 10% CO2 condition. Microb Biotechnol.

  24. Sun M, Chen F. Distribution of rare N4-like viruses in temperate estuaries unveiled by viromics. Environ Microbiol.

  25. Xie ZX, Yan KQ, Kong LF, Gai YB, Jin T, He YB, Wang YY, Chen F, Lin L, Lin ZL, Xu HK, Shao ZZ, Liu SQ, Wang DZ. Metabolic tuning of a stable microbial community in the surface oligotrophic Indian Ocean revealed by integrated meta-omics. Mar Life Sci Technol.

  26. Sosa A, Chen F. An In Situ Study to Understand Community Structure of Estuarine Microbes on the Plastisphere. Microorganisms.

  27. Chen, Q., Lønborg, C., Chen, F., Gonsior, M., Li, Y., Cai, R., He, C., Chen, J., Wang, Y., Shi, Q., Jiao, N. and Zheng, Q. Increased microbial and substrate complexity result in higher molecular diversity of the dissolved organic matter pool. Limnol Oceanogr.

  28. Mei Zhang, Ying Li, Tiezhu Mi, Feng Chen & Yu Zhen. Transcriptomic reprogramming of diatom Minutocellus polymorphus grown on urea. Diatom Research.

  29. Stirrup R, Mausz MA, Silvano E, Murphy A, Guillonneau R, Quareshy M, Rihtman B, Ferretjans MA, He R, Todd JD, Chen F, Scanlan DJ, Chen Y. Aminolipids elicit functional trade-offs between competitiveness and bacteriophage attachment in Ruegeria pomeroyi. ISME J.

  30. Jia Y, Lahm M, Chen Q, Powers L, Gonsior M, Chen F. The Predominance of Ammonia-Oxidizing Archaea in an Oceanic Microbial Community Amended with Cyanobacterial Lysate. Microbiol Spectr.

  31. DasSarma P, Anton BP, Griffith JM, Kunka KS, Roberts RJ, DasSarma S. Genome Sequence of the Early 20th-Century Extreme Halophile Halobacterium sp. Strain NRC-34001. Microbiol Resour Announc.

  32. Kim JM, Kim YS, Kim YR, Choi MJ, DasSarma P, DasSarma S. Bioengineering of Halobacterium sp. NRC-1 gas vesicle nanoparticles with GvpC fusion protein produced in E. coli. Appl Microbiol Biotechnol.

  33. Laye VJ, Solieva S, Voelz VA, DasSarma S. Effects of Salinity and Temperature on the Flexibility and Function of a Polyextremophilic Enzyme. Int J Mol Sci.

  34. Luo Z, Shi J, Pandey P, Ruan ZR, Sevdali M, Bu Y, Lu Y, Du S, Chen EH. The cellular architecture and molecular determinants of the zebrafish fusogenic synapse. Dev Cell.

  35. Xiao H, Wang H, He Q, Zhou J, Du S. Gene expression and functional analysis of Aha1a and Aha1b in stress response in zebrafish. Comp Biochem Physiol B Biochem Mol Biol.

  36. Sun Y, Liu X, Xie X, Bai Y, Wang S, Teng W, Li D, Li H, Yu Z, Zhang M, Zhou Z, Liu X, Nie H, Du S, Li X, Li Q, Wang Q. A high-quality chromosome-level genome assembly of the bivalve mollusk Mactra veneriformis. G3 (Bethesda).

  37. Zhong Y, Yan W, Ruan J, Fang M, Yu C, Du S, Rai G, Tao D, Henderson MJ, Fang S. XBP1 variant 1 promotes mitosis of cancer cells involving upregulation of the polyglutamylase TTLL6. Hum Mol Genet. 

  38. Wu P, Yong P, Zhang Z, Xu R, Shang R, Shi J, Zhang J, Bi P, Chen E, Du S. Loss of Myomixer Results in Defective Myoblast Fusion, Impaired Muscle Growth, and Severe Myopathy in Zebrafish. Mar Biotechnol (NY).

  39. Jonas L, Hill R. Uptake of inorganic and organic phosphorus compounds by two marine sponges and their associated bacterial communities in aquaria. Environ Microbiol.

  40. Tizabi Daniela, Bachvaroff Tsvetan, Hill Russell T. Comparative analysis of assembly algorithms to optimize biosynthetic gene cluster identification in novel marine actinomycete genomes. Frontiers in Marine Science.

  41. Zhang S, Hill RT, Wang H. Genomic characterization and molecular dating of the novel bacterium Permianibacter aggregans HW001T, which originated from Permian ground water. Mar Life Sci Technol.

  42. Li J, Sellner K, Place A, Cornwell J, Gao Y. Mitigation of CyanoHABs Using Phoslock® to Reduce Water Column Phosphorus and Nutrient Release from Sediment. Int J Environ Res Public Health.

  43. Liu CL, Dasi EA, Watson AM, Place AR, Jagus R. eIF2α Phosphorylation in Response to Nutritional Deficiency and Stressors in the Aquaculture Fish, Rachycentron canadum. Journal of Marine Science and Engineering.

  44. Williams E, Bachvaroff T, Place A. A Comparison of Dinoflagellate Thiolation Domain Binding Proteins Using In Vitro and Molecular Methods. Mar Drugs.

  45. Williams E, Bachvaroff T, Place A. Dinoflagellate Phosphopantetheinyl Transferase (PPTase) and Thiolation Domain Interactions Characterized Using a Modified Indigoidine Synthesizing Reporter. Microorganisms.

  46. Grabowski S, Apolinario EA, Schneider NO, Marshall CW, Sowers K. Dethiosulfovibrio faecalis sp. nov., a novel proteolytic, non-sulphur-reducing bacterium isolated from a marine aquaculture solid waste bioreactor. Int J Syst Evol Microbiol.

  47. Söderlund-Venermo M, Varma A, Guo D, Gladue DP, Poole E, Pujol FH, Pappu H, Romalde JL, Kramer L, Baz M, Venter M, Moore MD, Nevels MM, Ezzikouri S, Vakharia VN, Wilson WC, Malik YS, Shi Z, Abdel-Moneim AS. World Society for Virology first international conference: Tackling global virus epidemics. Virology.

  48. Díaz MF, Calderón K, Rojas-Neyra A, Vakharia VN, Choque-Guevara R, Montalvan-Avalos A, Poma-Acevedo A, Rios-Matos D, Agurto-Arteaga A, Cauti-Mendoza MG, Perez-Martinez N, Isasi-Rivas G, Tataje-Lavanda L, Sernaque-Aguilar Y, Ygnacio F, Criollo-Orozco M, Huaccachi-Gonzalez E, Delgado-Ccancce E, Villanueva-Pérez D, Montesinos-Millán R, Gutiérrez-Manchay K, Pauyac-Antezana K, Ramirez-Ortiz I, Quiñones-Garcia S, Cauna-Orocollo Y, Vallejos-Sánchez K, Rios-Angulo A, Núñez-Fernández D, Salguedo-Bohorquez MI, Ticona J, Fernández-Sánchez M, Icochea E, Guevara-Sarmiento LA, Zimic M. COVID-19 Working Group in Perú. Intranasal vaccination of hamsters with a Newcastle disease virus vector expressing the S1 subunit protects animals against SARS-CoV-2 disease. Sci Rep.

  49. Castro-Sanguinetti GR, Marques Simas PV, Apaza-Chiara AP, Callupe-Leyva JA, Rondon-Espinoza JA, Gavidia CM, More-Bayona JA, Gonzalez Veliz RI, Vakharia VN, Icochea ME. Genetic subtyping and phylogenetic analysis of HA and NA from avian influenza virus in wild birds from Peru reveals unique features among circulating strains in America. PLoS One.

  50. Liu X, Zhang L, Zhang Y, Vakharia VN, Zhang X, Lv X, Sun W. Screening of genes encoding proteins that interact with ISG15: Probing a cDNA library from a snakehead fish cell line using a yeast two-hybrid system. Fish Shellfish Immunol.

  51. Cummings RD, Liu F-T, Rabinovich GA, Stowell S, Vasta GR. Chapter 36 “Galectins”. Essentials of Glycobiology-4th edition.

  52. Ou C, Li C, Feng C, Tong X, Vasta GR, Wang LX. Synthesis, binding affinity, and inhibitory capacity of cyclodextrin-based multivalent glycan ligands for human galectin-3. Bioorg Med Chem.

  53. Tanaka S, Zmora N, Levavi-Sivan B, Zohar Y. Chemogenetic Depletion of Hypophysiotropic GnRH Neurons Does Not Affect Fertility in Mature Female Zebrafish. Int J Mol Sci.

  54. Tanaka S, Zmora N, Levavi-Sivan B, Zohar Y. Vasoactive Intestinal Peptide Indirectly Elicits Pituitary LH Secretion Independent of GnRH in Female Zebrafish. Endocrinology.

  55. Havird, J.C., Brannock, P.M., Yoshioka, R.M., Vaught, R.C., Carlson, K., Edwards, C., Tracy, A., Twining, C.W., Zheng, Y., Chai, D., Wilson, A.E., Hairston, N.G. and Santos, S.R. Grazing by an endemic atyid shrimp controls microbial communities in the Hawaiian anchialine ecosystem. Limnol Oceanogr.

  56. Gavrilov SN, Zavarzina DG, Elizarov IM, Tikhonova TV, Dergousova NI, Popov VO, Lloyd JR, Knight D, El-Naggar MY, Pirbadian S, Leung KM, Robb FT, Zakhartsev MV, Bretschger O, Bonch-Osmolovskaya EA. Novel Extracellular Electron Transfer Channels in a Gram-Positive Thermophilic Bacterium. Front Microbiol.

  57. Tikhonova TV, Osipov EM, Dergousova NI, Boyko KM, Elizarov IM, Gavrilov SN, Khrenova MG, Robb FT, Solovieva AY, Bonch-Osmolovskaya EA, Popov VO. Extracellular Fe(III) reductase structure reveals a modular organization enabling S-layer insertion and electron transfer to insoluble substrates. Structure.

  58. Lan Xu, Mingli Zhao, Jun Hyung Ryu, Edward S. Hayman, William T. Fairgrieve, Yonathan Zohar, J. Adam Luckenbach, Ten-Tsao Wong. Reproductive sterility in aquaculture: A review of induction methods and an emerging approach with application to Pacific Northwest finfish species. Rev Aquac.

  59. Ryu JH, Xu L, Wong TT. Advantages, Factors, Obstacles, Potential Solutions, and Recent Advances of Fish Germ Cell Transplantation for Aquaculture-A Practical Review. Animals (Basel).

Adjunct Faculty Publications: 

  1. Alberti G, Campanella C, Paladino L, Porcasi R, Bavisotto CC, Pitruzzella A, Graziano F, Florena AM, Argo A, Conway de Macario E, Macario AJL, Cappello F, Bucchieri F, Barone R, Rappa F. The chaperone system in glioblastoma multiforme and derived cell lines: diagnostic and mechanistic implications. Front Biosci (Landmark Ed).

  2. Scalia F, Barone R, Rappa F, Marino Gammazza A, Lo Celso F, Lo Bosco G, Barone G, Antona V, Vadalà M, Vitale AM, Donato Mangano G, Amato D, Sentiero G, Macaluso F, Myburgh KH, Conway de Macario E, Macario AJL, Giuffrè M, Cappello F. Muscle histopathological abnormalities in a patient with a CCT5 mutation predicted to affect the apical domain of the chaperonin subunit. Front Mol Biosci.

  3. Alberti G, Vergilio G, Paladino L, Barone R, Cappello F, Conway de Macario E, Macario AJL, Bucchieri F, Rappa F. The Chaperone System in breast cancer: Roles and therapeutic prospects of the molecular chaperones Hsp27, Hsp60, Hsp70, and Hsp90. Int J Mol Sci.

  4. Basset CA, Rappa F, Barone R, Florena AM, Porcasi R, Conway de Macario E, Macario AJL, Leone A. “The Chaperone System in salivary glands: Hsp90 prospects for differential diagnosis and treatment of malignant tumors.” Int J Mol Sci.