2024 Publications (Full List)
*indicates IMET student
Bachvaroff:
*Judd, M., *Wira, J., Place, A.R., Bachvaroff, T. 2024. Long-read sequencing unlocks new insights into the Amphidinium carterae microbiome. Marine Drugs.
Chatterjee:
Lai, L., *Satishkumar, N., *Cardozo, S., Hemmadi, V., Marques, L.B., Huang, L., Filipe, S.R., Pinho, M.G.,
Chambers, H.F., Chatterjee, S.S. 2024. Altered PBP4 and GdpP functions synergistically mediate MRSA-like high-level, broad-spectrum β-lactam resistance in Staphylococcus aureus. mBio.
Chen:
Jiao, N., Luo, T., Chen, Q., Zhao, Z., Xiao, X., Liu, J., Jian, Z., Xie, S., Thomas, H., Herndl, G.J., Benner, R., Gonsior, M., Chen, F., Cai, W.-J., Robinson, C. 2024. The microbial carbon pump and climate change. Nat. Rev. Microbiol.
Cai, H., McLimans, C.J., Jiang, H., Chen, F., Krumholz, L.R., Hambright, K.D. 2024. Aerobic anoxygenic phototrophs play important roles in nutrient cycling within cyanobacterial Microcystis bloom microbiomes. Microbiome.
Wang, H., Liu, F., Wang, M., Bettarel, Y., Eissler, Y., Chen, F., Kan, J. 2024. Planktonic eukaryotes in the Chesapeake Bay: contrasting responses of abundant and rare taxa to estuarine gradients. Microbiol. Spectr.
Jia, Y., He, C., Lahm, M., Chen, Q., Powers, L., Gonsior, M., Chen, F. 2024. A pilot study suggests the correspondence between SAR202 bacteria and dissolved organic matter in the late stage of a year-long microcosm incubation. Front. Microbiol.
He, C., *Fucich, D., *Sosa, A, *Wang, H., Kan, J., Liu, J., Xu, Y., Jiao, N., Gonsior, M., Chen, F.. 2024. Deep metagenomic sequencing unveils novel SAR202 lineages and their vertical adaptation in the ocean. Communications Biology.
Xu, Y., Liu, B., Jiao, N., Liu, J., Chen, F. 2024. New evidence supports the prophage origin of RcGTA. Appl. Environ. Microbiol.
Chen, H., Sosa, A., Chen, F. 2024. Growth and cell size of microalga Auxenochlorella protothecoides AS-1 under different trophic modes. Microorganisms.
Gonsior, M., Lahm, M., Powers, L., Chen, F., McCallister, S.L., Liang, D., Guinan, G., Schmitt-Kopplin, P. 2024. Optical properties and molecular differences in dissolved organic matter at the Bermuda Atlantic and Hawai'i ALOHA time-series stations. Environ. Sci. Adv.
Zhao, Z., Chen, Q., Liu, J., Jiao, N., Chen, F. 2025. Genome-streamlined SAR202 bacteria are widely present and actively expressing in oceanic environments. ISME J.
Pierson, J., Nesslage, G., Fries, A., Kelsey, H., Chen, F., Davis, C., Rose, K. 2024. Recognizing JEDI efforts in the hiring, tenure, and promotion process. Oceanography.
Chung:
Simões, L.A.R., Normann, R.S., Chung, J.S., Vinagre, A.S. 2024. A brief and updated introduction to the neuroendocrine system of crustaceans. Mol. Cell. Endocrinol.
Zhao, Z., Liu, J., Jiao, N., Chen, F. 2024. Prophage origin of gene transfer agents revealed by comparative genomics of Alphaproteobacteria. Sci. Rep.
Choi, M-J., Oh, Y.D., Chung, J.S., Lim, H.K. 2024. Palliative effect of abalone insulin-related peptide 2 on emersion stress-induced hyperglycemia in the Pacific abalone (Haliotis discus hannai). Aquaculture.
Simões, L.A.R., Normann, R.S., Chung, J.S., Vinagre, A.S. 2024. A brief and updated introduction to the neuroendocrine system of crustaceans. Mol. Cell. Endocrinol.
DasSarma:
Wang, J., DasSarma, S. 2024. Contributions of medical greenhouse gases to climate change and their possible alternatives. International Journal of Environmental Research and Public Health.
Dooley:
Ludwig, S.D., Meksiriporn, B., Tan, J., Kureshi, R., Mishra, A., Kaeo, K.J., Zhu, A., Stavrakis, G., Lee, S.J., Schodt, D.J., Wester, M.J., Kumar, D., Lidke, K.A., Cox, A.L., Dooley, H.M., Nimmagadda, S., Spangler, J.B. 2024. Multiparatopic antibodies induce targeted downregulation of programmed death-ligand 1. Cell Chemical Biology.
Du:
*Xu, R., Li, S., Chien, C.J., Zhong, Y., Xiao, H., Fang, S., Du, S. 2024. Expression of Smyd1b_tv1 by Alternative Splicing in Cardiac Muscle is Critical for Sarcomere Organization in Cardiomyocytes and Heart Function. Molecular and Cellular Biology.
Yong, P., Zhang, Z., Du, S. 2024. Ectopic expression of Myomaker and Myomixer in slow muscle cells induces slow muscle fusion and myofiber death. J. Genet. Genomics.
Min, Y., Li, Q., Yu, H., Du, S. 2024. Examination of Wnt signaling mediated melanin transport and shell color formation in Pacific oyster (Crassostrea gigas). Mar. Life Sci. Technol.
Li, X., Bai, Y., Xu, C., Liu, S., Yu, H., Kong, L., Du, S., Li, Q. 2024. OysterDB: a genome database for Ostreidae. Mar. Biotechnol.
Hu, B., Yu, H., Du, S., Li, Q. 2024. Protoporphyrin IX metabolism mediated via translocator protein (CgTspO) involved in orange shell coloration of Pacific oyster (Crassostrea gigas). Int. J. Biol. Macromol.
Yang, Q., Yu, H., Du, S., Li, Q. 2024. Overexpression of CDC42 causes accumulation of DNA damage leading to failure of oogenesis in triploid Pacific oyster Crassostrea gigas. Int. J. Biol. Macromol.
Hill:
*Tizabi, D., Bachvaroff, T, Hill, R.T. 2024. Complete genome sequence of Imperialibacter roseus strain P4T. Microbial Resource Announcements.
*Lee, Y-Y., *Jonas, L., Hill, R., Place, A., Silsbe, G., Hunsicker, S., North, E., Li, Y. 2024. Engineering whiting events in culture: a microalgae-driven calcium carbonate and biomass production process at high pH and alkalinity with the marine microalga Nannochloropsis oceanica IMET1. J. CO2 Util.
Jagus:
Chigbu, P., Babcock, E.A., Gibson, D.M., Hoskins-Brown, D., Jagus, R., Miller, J.A., Sexton, M.A., Smith, S.L., Stevens, B., Die, D.J., Schott, E., Young, V. 2024. Preparing a diverse future workforce in marine and fisheries science: the NOAA Living Marine Resources Cooperative Science Center. Oceanography.
Jones, G.D., Williams, E.P., Haq, S., Bachvaroff, T.R., Sanchez, M.B., Place, A.R., Jagus, R. 2024. Regulated mRNA recruitment in dinoflagellates is reflected in hyper-variable mRNA spliced leaders and novel eIF4Es. eLife.
Li:
*Lee, Y.-Y., *Jonas, L., Hill, R., Place, A., Silsbe, G., Hunsicker, S., North, E. & Li, Y. (2024). Engineering whiting events in culture: A microalgae-driven calcium carbonate and biomass production process at high pH and alkalinity with the marine microalga Nannochloropsis oceanica IMET1 Journal of CO2 Utilization.
*Ramarui, K. and Li, Y. (2024). Proteomics and phosphoproteomics analysis of Haematococcus pluvialis: An improved method to generate and interpret proteomics and phosphoproteomics data of a non-model species. Journal of Applied Phycology.
*Ramarui, K., Zhong, J., and Li, Y. (2024). Proteomic and phosphoproteomic analysis of a Haematococcus pluvialis (Chlorophyceae) mutant with a higher heterotrophic cell division rate reveals altered pathways involved in cell proliferation and nutrient partitioning. Journal of Phycology.
Macario:
Place, A.R., Ramos-Franco, J., Waters, A.L., Hamann, M.T. 2023. A toxic sterolysin from a 1950’s culture of Gymnodinium veneficum. Scientific Reports.
Paladino, L., Rappa, F., Barone, R., Macaluso, F., Zummo, F.P., David, S., Szychlinska, M.A., Bucchieri, F., Conway de Macario, E., Macario, A.J.L., Cappello, F., Marino Gammazza, A. 2023. NF-kB regulation and the chaperone system mediate restorative effects of the probiotic Lactobacillus fermentum LF31 in the small intestine and cerebellum of mice with ethanol-induced damage. Biology.
Basset, C.A., Rappa, F., Barone, R., Florena, A.M., Porcasi, R., Conway de Macario, E., Macario, A.J.L., Leone, A. 2022. The chaperone system in salivary glands: Hsp90 prospects for differential diagnosis and treatment of malignant tumors. Int. J. Mol. Sci.
Noori, L., Saqagandomabadi, V., Di Felice, V., David, S., Caruso Bavisotto, C., Bucchieri, F., Cappello, F., Conway de Macario, E., Macario, A.J.L., Scalia, F. 2024. Putative roles and therapeutic potential of the chaperone system in amyotrophic lateral sclerosis and multiple sclerosis. Cells.
Vitale, A.M., Paladino, L., Caruso Bavisotto, C., Barone, R., Rappa, F., Conway de Macario, E., Cappello, F., Macario, A.J.L., Marino Gammazza, A. 2024. Interplay between the chaperone system and gut microbiota dysbiosis in systemic lupus erythematosus pathogenesis: is molecular mimicry the missing link between those two factors? Int. J. Mol. Sci.
Place:
Place, A.R., Ramos-Franco, J., Waters, A.L., Peng, J., Hamann, M.T. 2024. Sterolysin from a 1950s culture of Karlodinium veneficum (aka Gymnodinium veneficum Ballantine) forms lethal sterol dependent membrane pores. Scientific Reports.
Prause, H.-C., Berk, D., Menschel, E., Hansen, P.J., Larsen, T., Marko, D., Del Favero, G., Place, A., Varga, E. 2024. How relevant are sterols in the mode of action of prymnesins? Aquat. Toxicol.
*Wira, J., Place, A.R. (2024). SuMOS, a submerged microscope for observing substrates: Studying benthic activity in aquatic environments. HardwareX
Schott:
Tavares, C.P.D.S., Cibulski, S.P., Castilho-Westphal, G.G., Zhao, M., Silva, U.A.T., Schott, E.J., Ostrensky, A. 2024. Virus discovery in cultured portunid crabs: Genomic, phylogenetic, histopathological and microscopic characterization of a reovirus and a new bunyavirus. J. Invertebr. Pathol.
Tavares, C. P. D. S., Cibulski, S. P., Castilho-Westphal, G. G., Zhao, M., Silva, U. D. A. T., Schott, E. J., & Ostrensky, A. (2024). Virus discovery in cultured portunid crabs: Genomic, phylogenetic, histopathological and microscopic characterization of a reovirus and a new bunyavirus. Journal of Invertebrate Pathology
McLellan, S.L., Chariton, A., Codello, A. et al. 2024. Universal microbial indicators provide surveillance of sewage contamination in harbours worldwide. Nature Water.
Schreier:
*Agnew-Camiener, M.V., Eisenlord, M.E., Friedman, C.S., Schreier, H.J. & Burge, C.A. 2025. Pathogenicity and phylogeny of Labyrinthula spp. isolated in Washington and Oregon, USA. Journal of Eukaryotic Microbiology, 72, e13073.
Schott, E.J., Almeida, M.G., Schryer, M.L., Lin, Y., Shalapyonok, A., O’Donnell, K.L., Mayfield, A.E., Jagus, R. 2024. Acute mortality in Crassostrea virginica spat associated with an Eukaryota-rich microbial community. J. Invertebr. Pathol.
Sowers: In Press
Tracy:
Allison M. Tracy, Katrina M. Pagenkopp Lohan, Ryan B. Carnegie, Carol B. McCollough, Melissa Southworth, Matthew B. Ogburn. 2024. Co-infection is linked to infection prevalence and intensity in oysters amidst high environmental and spatial variation. Journal of Invertebrate Pathology.
Anchondo, Z. B., Tracy, A. M., Raza, A., Meckler, K. A., & Ogburn, M. B. (2024). Reefs in no-take reserves host more oysters, macroparasites, and macrofauna than harvested reefs across an estuarine salinity gradient. Marine Ecology Progress Series, 739, 65–83.
Vakharia:
Vakharia, V.N., Ammayappan, A., Yusuff, S., Tesfaye, T.M., Kurath, G. 2024. Heterologous exchanges of glycoprotein and non-virion protein in novirhabdoviruses: Assessment of virulence in yellow perch (Perca flavescens) and rainbow trout (Oncorhynchus mykiss). Viruses.
Guo, M., Zhou, Z., Xu, S., Vakharia, V. N., Kong, W., & Liu, X. (2024). Development of a loop-mediated isothermal amplification (LAMP) assay for rapid visual detection of snakehead vesiculovirus (SHVV) in snakehead. Fisheries Science.
Dey, S., Murugasamy, R., Buragohain, L., D’silva, A. L., Sarma, J., Bharali, A., Ramakrishnan, S., Saminathan, M., Barman, N. N., Vakharia, V. N., & Chellappa, M. M. (2024). Newcastle disease virus expressing cap gene of porcine circovirus type 2 confers protection in mice and induced long-lasting neutralizing antibodies in pigs. Vaccines.
Vasta:
*Iqbal, M., Feng, C., Zong, G., Wang, L.X., Vasta, G.R. 2024. Galectin-3 disrupts tight junctions of airway epithelial cell monolayers by inducing expression and release of matrix metalloproteinases upon influenza A infection. Glycobiology.
Marshall, J. N., Klein, M. N., Karki, P., Promnares, K., Setua, S., Fan, X., Buehler, P. W., Birukov, K. G., Vasta, G. R., & Fontaine, M. J. (2024). Aberrant GPA expression and regulatory function of red blood cells in sickle cell disease. Blood Advances.
Wong:
Ten-Tsao Wong, Yonathan Zohar. 2024. Reproductive technology (non-human/non-primate): Sex control and sterilization in fish. Reference Module in Biomedical Sciences.
Zmora:
*Tanaka S, Yu Y, Levavi-Sivan B, Zmora N, Zohar Y. 2024. GnRH-gonadotropes interactions revealed by pituitary single-cell transcriptomics in zebrafish. Endocrinology.
Yu, Y., *Tanaka, S., Wong, T.-T., Zohar, Y., & Zmora, N. (2024). Loss of function of vasoactive-intestinal peptide alters sex ratio and reduces male reproductive fitness in zebrafish. Endocrinology.
Zohar:
*Yu Y, *Tanaka S, Wong TT, Zohar Y, Zmora N. 2024. Loss of function of vasoactive-intestinal peptide alters sex ratio and reduces male reproductive fitness in zebrafish. Endocrinology.